Model radtorch.model
Model
Model class wraps around pytorch models to return a new modified version of that model. Modifications include changing the number of input channels, output channels or unfreezing the whole neural network.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
model_arch |
str |
Target model architecture. See |
required |
in_channels |
int |
Input Channels. |
required |
out_classes |
int |
Output Classes. |
required |
pre_trained |
bool |
If True, returns a model pre-trained on ImageNet. |
required |
unfreeze_all |
bool |
If True, unfreezes all model weights for training, not just the last FC layer. |
required |
vgg_avgpool |
bool |
When using VGG model, if True: this changes the |
required |
vgg_fc |
bool |
When using VGG model, if True: the |
required |
Returns:
| Type | Description |
|---|---|
model |
Instance of the target pytorch model with desired modifications. |
Models with 1 input channels
Since most of pre-trained models were trained using ImageNet 3-channel images (i.e. RGB), changing the number of input channels to 1 will replace the first Conv2d layer in the model with a new layer.
The new layer weights will be initiallized as noted here.
The new layer wweights will be unfrozen by default during training unless you specify so.
Output FC layer
The output FC (nn.Linear) layer will be unfrozen by default for training.
Using VGG models
When using VGG models, vgg_fc parameter should be specified. Usually set to its default value True.
Examples:
>>> m = radtorch.model.Model('vgg16', 3, 10)
>>> m
VGG(
(features): Sequential(
(0): Conv2d(3, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1)) #<<< Number of input channels is 3
(1): ReLU(inplace=True)
(2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(3): ReLU(inplace=True)
(4): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(5): Conv2d(64, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(6): ReLU(inplace=True)
(7): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(8): ReLU(inplace=True)
(9): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(10): Conv2d(128, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(11): ReLU(inplace=True)
(12): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(13): ReLU(inplace=True)
(14): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(15): ReLU(inplace=True)
(16): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(17): Conv2d(256, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(18): ReLU(inplace=True)
(19): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(20): ReLU(inplace=True)
(21): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(22): ReLU(inplace=True)
(23): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(24): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(25): ReLU(inplace=True)
(26): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(27): ReLU(inplace=True)
(28): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(29): ReLU(inplace=True)
(30): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
)
(avgpool): AdaptiveAvgPool2d(output_size=(1, 1))
(classifier): Linear(in_features=512, out_features=10, bias=True) #<<< Classifier is one layer with output = 10
)
>>> m = radtorch.model.Model('vgg16', 1, 10)
>>> m
VGG(
(features): Sequential(
(0): Conv2d(1, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1)) #<<< Number of input channels is 1
(1): ReLU(inplace=True)
(2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(3): ReLU(inplace=True)
(4): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(5): Conv2d(64, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(6): ReLU(inplace=True)
(7): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(8): ReLU(inplace=True)
(9): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(10): Conv2d(128, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(11): ReLU(inplace=True)
(12): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(13): ReLU(inplace=True)
(14): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(15): ReLU(inplace=True)
(16): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(17): Conv2d(256, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(18): ReLU(inplace=True)
(19): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(20): ReLU(inplace=True)
(21): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(22): ReLU(inplace=True)
(23): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(24): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(25): ReLU(inplace=True)
(26): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(27): ReLU(inplace=True)
(28): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(29): ReLU(inplace=True)
(30): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
)
(avgpool): AdaptiveAvgPool2d(output_size=(1, 1))
(classifier): Linear(in_features=512, out_features=10, bias=True) #<<< Classifier is one layer with output = 10
)
>>> m = radtorch.model.Model('vgg16', 1, 10, vgg_avgpool=False, vgg_fc=False)
>>> m
VGG(
(features): Sequential(
(0): Conv2d(1, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1)) #<<< Number of input channels is 3
(1): ReLU(inplace=True)
(2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(3): ReLU(inplace=True)
(4): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(5): Conv2d(64, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(6): ReLU(inplace=True)
(7): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(8): ReLU(inplace=True)
(9): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(10): Conv2d(128, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(11): ReLU(inplace=True)
(12): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(13): ReLU(inplace=True)
(14): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(15): ReLU(inplace=True)
(16): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(17): Conv2d(256, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(18): ReLU(inplace=True)
(19): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(20): ReLU(inplace=True)
(21): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(22): ReLU(inplace=True)
(23): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
(24): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(25): ReLU(inplace=True)
(26): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(27): ReLU(inplace=True)
(28): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
(29): ReLU(inplace=True)
(30): MaxPool2d(kernel_size=2, stride=2, padding=0, dilation=1, ceil_mode=False)
)
(avgpool): AdaptiveAvgPool2d(output_size=(7, 7))
(classifier): Sequential(
(0): Linear(in_features=25088, out_features=4096, bias=True)
(1): ReLU(inplace=True)
(2): Dropout(p=0.5, inplace=False)
(3): Linear(in_features=4096, out_features=4096, bias=True)
(4): ReLU(inplace=True)
(5): Dropout(p=0.5, inplace=False)
(6): Linear(in_features=4096, out_features=10, bias=True) #<<< Output classes = 10
)
)